De novo transcriptomic assembly and profiling of Rigidoporus microporus during saprotrophic growth on rubber wood
نویسندگان
چکیده
منابع مشابه
De novo Assembly and Transcriptomic Profiling of the Grazing Response in Stipa grandis
BACKGROUND Stipa grandis (Poaceae) is one of the dominant species in a typical steppe of the Inner Mongolian Plateau. However, primarily due to heavy grazing, the grasslands have become seriously degraded, and S. grandis has developed a special growth-inhibition phenotype against the stressful habitat. Because of the lack of transcriptomic and genomic information, the understanding of the molec...
متن کاملClustering of Short Read Sequences for de novo Transcriptome Assembly
Given the importance of transcriptome analysis in various biological studies and considering thevast amount of whole transcriptome sequencing data, it seems necessary to develop analgorithm to assemble transcriptome data. In this study we propose an algorithm fortranscriptome assembly in the absence of a reference genome. First, the contiguous sequencesare generated using de Bruijn graph with d...
متن کاملin vitro and in vivo synthetic fungicides control of rigidoporus microporus on para rubber in nigeria
rigidoporus microporus is a major threat to hevea brasiliensis in the rubber growing regions of the world. in vitro synthetic fungicidesensitivity assays of tridemorph, benomyl and bayfidan at seven different concentrations, and in vivo effectiveness of the three fungicides on r. microporus inoculated on rubber seedlings were evaluated. the three chemical fungicides used in this study were effe...
متن کاملDe Novo Assembly and Transcriptome Analysis of the Rubber Tree (Hevea brasiliensis) and SNP Markers Development for Rubber Biosynthesis Pathways
Hevea brasiliensis (Willd. Ex Adr. Juss.) Muell.-Arg. is the primary source of natural rubber that is native to the Amazon rainforest. The singular properties of natural rubber make it superior to and competitive with synthetic rubber for use in several applications. Here, we performed RNA sequencing (RNA-seq) of H. brasiliensis bark on the Illumina GAIIx platform, which generated 179,326,804 r...
متن کاملDe novo hybrid assembly of the rubber tree genome reveals evidence of paleotetraploidy in Hevea species
Para rubber tree (Hevea brasiliensis) is an important economic species as it is the sole commercial producer of high-quality natural rubber. Here, we report a de novo hybrid assembly of BPM24 accession, which exhibits resistance to major fungal pathogens in Southeast Asia. Deep-coverage 454/Illumina short-read and Pacific Biosciences (PacBio) long-read sequence data were acquired to generate a ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Genomics
سال: 2016
ISSN: 1471-2164
DOI: 10.1186/s12864-016-2574-9